CoNCRAtlas


CoNCRAtlas ID CoMIRGH115
Mature miRNA sequence CUGAAGUGUUUGGGGGAACUC
Locus A13:19973491-19973626(+)
Alignment 
Displayed Location: A13:19973488-19973632 Strand: +
AGAGUCAGCUGUCCUCUUGAGUUCCCCUGAUCACUUCACCGGGGUUAUGGGGUCUGCUCUUCUCUUCUCAGAGCCUUGUUAAAAGGGAGGUCCCUAAUGACCUACUGAAGUGUUUGGGGGAACUCUGGCUGCCACCUGACACUGA
((.(((((.((.(..((.((((((((((((.(((((((...(((((((((((.((.(((((((((....)))).........))))).)).)))).)))))))..))))))).)))))))))))).))..).)).))))).))).
........................................................................................................CUGAAGUGUUUGGGGGAACUC.................... ghi-miR396e
....................GUUCCCCUGAUCACUUCACCG........................................................................................................ ghi-miR396e*
miRNA family miR396

Expression profile

Tissue specificity indexovule: 0.0052; fiber: 0.2325; shoot apical: 0.0073; ovule and fiber: 0.0023; cotyledon: 0.127; cotton boll: 0.3937; leaf: 0.1537; anthers: 0.004; hypocotyls: 0.0373; seedlings: 0.037 | Tau: 0.846
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH51706, CoLNCGH01290, CoLNCGH18451, CoLNCGH01289, CoLNCGH05362, CoLNCGH07996, CoLNCGH07945, CoLNCGH07944, CoLNCGH43807, CoLNCGH43808
Target CDS Gh_A13G153900.1, Gh_D13G156900.1, Gh_D11G276200.1, Gh_D03G096300.1, Gh_D09G053600.1, Gh_A09G057300.1, Gh_A12G123200.1, Gh_A01G135900.1, Gh_A01G066200.1, Gh_A03G133100.1
sORF
Reference
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PMID Title