| CoNCRAtlas ID | CoMIRGH115 |
|---|---|
| Mature miRNA sequence | CUGAAGUGUUUGGGGGAACUC |
| Locus | A13:19973491-19973626(+) |
| Alignment | Displayed Location: A13:19973488-19973632 Strand: + AGAGUCAGCUGUCCUCUUGAGUUCCCCUGAUCACUUCACCGGGGUUAUGGGGUCUGCUCUUCUCUUCUCAGAGCCUUGUUAAAAGGGAGGUCCCUAAUGACCUACUGAAGUGUUUGGGGGAACUCUGGCUGCCACCUGACACUGA ((.(((((.((.(..((.((((((((((((.(((((((...(((((((((((.((.(((((((((....)))).........))))).)).)))).)))))))..))))))).)))))))))))).))..).)).))))).))). ........................................................................................................CUGAAGUGUUUGGGGGAACUC.................... ghi-miR396e ....................GUUCCCCUGAUCACUUCACCG........................................................................................................ ghi-miR396e* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0052; fiber: 0.2325; shoot apical: 0.0073; ovule and fiber: 0.0023; cotyledon: 0.127; cotton boll: 0.3937; leaf: 0.1537; anthers: 0.004; hypocotyls: 0.0373; seedlings: 0.037 | Tau: 0.846 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH51706, CoLNCGH01290, CoLNCGH18451, CoLNCGH01289, CoLNCGH05362, CoLNCGH07996, CoLNCGH07945, CoLNCGH07944, CoLNCGH43807, CoLNCGH43808 |
|---|
| Target CDS | Gh_A13G153900.1, Gh_D13G156900.1, Gh_D11G276200.1, Gh_D03G096300.1, Gh_D09G053600.1, Gh_A09G057300.1, Gh_A12G123200.1, Gh_A01G135900.1, Gh_A01G066200.1, Gh_A03G133100.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |