CoNCRAtlas



CoNCRAtlas ID CoMIRGH111
Mature miRNA sequence GUUCCCUAGAUCACUUCACUG
Locus A13:16579344-16579457(-)
Alignment
Displayed Location: A13:16579336-16579475 Strand: -
AGAGUCAGCUGUCCUCUUGAGUUCCCUAGAUCACUUCACUGGGGUUAUGGGGUCUGCUCUUGCCAGAGCCUAGAUAAACGGGAGGUCCCUGAUGACCUACUGAAGUGUUUGGGGGAACUCUGGUUGGCACCUGACACAGA
...(((((.((((..((.(((((((((.((.(((((((...((((((((((.(((((....).)))).)))........(((....)))..)))))))..))))))).)).))))))))).))..)))).))))).....
....................GUUCCCUAGAUCACUUCACUG................................................................................................... ghi-miR1424
...................................................................................................CUGAAGUGUUUGGGGGAACUC.................... ghi-miR1424*
miRNA family miR1424

Expression profile

Tissue specificity indexovule: 0.0008; fiber: 0.0082; shoot apical: 0.0009; ovule and fiber: 0.0003; cotyledon: 0.5207; cotton boll: 0.0033; leaf: 0.0462; anthers: 0.0027; hypocotyls: 0.0004; seedlings: 0.4164 | Tau: 0.9079
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A131657763816579896-CoLNCGH45124
A131657828016579896-CoLNCGH45125
A131657828916579896-CoLNCGH45126
A131657839816579896-CoLNCGH45127
A131657842416579896-CoLNCGH45128
A131657842616579896-CoLNCGH45129
A131657859016579896-CoLNCGH45130
A131657877816579896-CoLNCGH45131
Target lncRNA CoLNCGH51706, CoLNCGH01290, CoLNCGH18451, CoLNCGH01289, CoLNCGH05362, CoLNCGH07996, CoLNCGH07945, CoLNCGH07944, CoLNCGH43807, CoLNCGH43808
Target CDS Gh_A13G153900.1, Gh_D13G156900.1, Gh_D11G276200.1, Gh_A12G232900.1, Gh_D12G227300.1, Gh_D03G096300.1, Gh_D09G053600.1, Gh_A09G057300.1, Gh_A12G123200.1, Gh_A01G135900.1
sORF
Reference
PMID Title
0NA