CoNCRAtlas


CoNCRAtlas ID CoMIRGH109
Mature miRNA sequence UGCAUUUGCACCUGCACCUUA
Locus A13:108380573-108380693(+)
Alignment 
Displayed Location: A13:108380554-108380713 Strand: +
GCUAAGAUGUAGCUUUUGUCUGCAUUUGCACCUGCACCUUAUUGUUUGUUUCAGCUAUGUCAGAAAAACAAAACACUGUUAAAUAUGUUUUGUGUGGUGUGGUUGGAGACCAAACAAAGAGGUGCAGAUGCAGUUGCAGAUGAAUGCCAUUUUAGCUAUC
(((((((((..((.((((((((((.(((((.(((((((((.(((((((((((((((((((((.(....(((((((.(((...))))))))))).))))))))))))))..))))))).))))))))).))))).)))))))))).)))))))))))...(
....................UGCAUUUGCACCUGCACCUUA....................................................................................................................... ghi-miR530
.......................................................................................................................AGGUGCAGAUGCAGUUGCAGA.................... ghi-miR530*
miRNA family miR530

Expression profile

Tissue specificity indexfiber: 0.0504; shoot apical: 0.5923; ovule and fiber: 0.0228; cotyledon: 0.0386; cotton boll: 0.0374; leaf: 0.0173; anthers: 0.1821; seedlings: 0.059 | Tau: 0.9312

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH36416, CoLNCGH36415, CoLNCGH36426, CoLNCGH36425, CoLNCGH36423, CoLNCGH36421, CoLNCGH36419, CoLNCGH36418, CoLNCGH40402, CoLNCGH47428
Target CDS Gh_A09G248300.1, Gh_D09G239200.1, Gh_D06G090300.2, Gh_D06G090300.3, Gh_D06G090300.1, Gh_D05G399900.1, Gh_D05G312900.1, Gh_A09G158100.1, Gh_A03G103000.1, Gh_D02G118200.1
sORF
Reference
PMID Title
No references available