CoNCRAtlas


CoNCRAtlas ID CoMIRGH107
Mature miRNA sequence UGACAGAAGAGAGUGAGCACU
Locus A13:103337057-103337206(-)
Alignment 
Displayed Location: A13:103337061-103337184 Strand: -
CAAUGAGAACAAAGAGAGAUUGACAGAAGAGAGUGAGCACUCACAGGCAAUUGUAUGGAAAAGGCAUACCUUUAUCCGUGGUUGCUUACUUCUCUUCUGUCGGCUAUUUUCUUCUUCUUCUUCU
............(((.((.((((((((((((((((((((.((((.((.((..(((((.......)))))..)).)).)))).))))))).))))))))))))))).))))))))))))))))))
....................UGACAGAAGAGAGUGAGCACU................................................................................... ghi-miR156i
..................................................................................UGCUUACUUCUCUUCUGUCGGC.................... ghi-miR156i*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0004; fiber: 0.0026; shoot apical: 0.051; ovule and fiber: 0.0007; cotyledon: 0.3961; cotton boll: 0.0003; callus: 0.0504; leaf: 0.0335; anthers: 0.0009; hypocotyls: 0.2677; seedlings: 0.1965 | Tau: 0.8475

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH29713, CoLNCGH34498, CoLNCGH35314, CoLNCGH35315, CoLNCGH35313, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity