CoNCRAtlas


CoNCRAtlas ID CoMIRGH106
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus A13:102973936-102974050(-)
Alignment 
Displayed Location: A13:102973919-102974041 Strand: -
CUUCUUUGGGACAGAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGUAUUUGUAUAAAGCUUAUACUAAUGCUUUUGCGUGCUCACUUCUCUUUCCGUCAGCUUCCAGUGCCGGGAGUUGAU
(((((..((((.((((((.(((((.(((((((((((((((.((((((((((.((((((...)))))).)))))))))).)))))))).)))))))..)))))....(((.(((((((..((((
....................UGACAGAAGAGAGUGAGCAC................................................................................... ghi-miR156h
.................................................................................GCUCACUUCUCUUUCCGUCAGC.................... ghi-miR156h*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0003; fiber: 0.0034; shoot apical: 0.1337; cotyledon: 0.1126; cotton boll: 0.0001; callus: 0.0018; leaf: 0.0905; anthers: 0.0219; hypocotyls: 0.5398; seedlings: 0.096 | Tau: 0.9147

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH34498, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539, CoLNCGH28143, CoLNCGH28144, CoLNCGH28145
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
PMID Title
28327647MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development