CoNCRAtlas


CoNCRAtlas ID CoMIRGH105
Mature miRNA sequence UCCAGAAGCAGAGUUAGGACA
Locus A12:99928817-99928926(+)
Alignment 
Displayed Location: A12:99928799-99928945 Strand: +
ACCAGUGGAAUAAAAAAAAUUCCAGAAGCAGAGUUAGGACAUUGACAUGUGUCCUUUUUAUUAUUUUUAAAAACUUUUAAAUUUAUUUUAGGGGCACAUGCUAAUGUCCUGAACCUGCUUGUGGAAUAUUUGUAUUCCACUGGCAGU
.(((((((((((..(((.((((((.((((((..(((((((((((.(((((((((((.....((..((((((....))))))..))....))))))))))).)))))))))))..)))))).)))))).))).)))))))))))..))
....................UCCAGAAGCAGAGUUAGGACA.......................................................................................................... ghi-miRN20
..........................................................................................................UCCUGAACCUGCUUGUGGAAU.................... ghi-miRN20*
miRNA family miRN20

Expression profile

Tissue specificity indexovule: 0.0154; fiber: 0.0328; shoot apical: 0.3577; ovule and fiber: 0.0584; cotyledon: 0.0079; cotton boll: 0.0052; callus: 0.0163; leaf: 0.1891; anthers: 0.1591; hypocotyls: 0.1531; seedlings: 0.0049 | Tau: 0.8205

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH16275, CoLNCGH16274, CoLNCGH16273, CoLNCGH16272, CoLNCGH16271, CoLNCGH21165, CoLNCGH10823, CoLNCGH10824, CoLNCGH47428, CoLNCGH03667
Target CDS Gh_D02G006600.1, Gh_A08G268400.1, Gh_A10G063200.1, Gh_D10G078200.1, Gh_A12G301800.1, Gh_D12G295600.1, Gh_A03G229000.1, Gh_D10G196200.1, Gh_A05G178100.1, Gh_A05G178100.2
sORF
Reference
PMID Title
No references available