| CoNCRAtlas ID | CoMIRGH104 |
|---|---|
| Mature miRNA sequence | UUCCACAGCUUUCUUGAACUU |
| Locus | A12:83220343-83220500(-) |
| Alignment | Displayed Location: A12:83220337-83220496 Strand: - UGGGGUUUGGUUGCAUGCUUUUCCACAGCUUUCUUGAACUUGGCUACUCUCUCUGGCUCUGCAUGCCUUCACUUCUCUAUUCCUACUGGAAGCAUUAAUCCUCAGUCAGUGGAUAUGAAGCUCAAGAAAGCUGUGGGAAAUCAUGGACGCCCCAUUUUUA ((((((...(((.((((.(((((((((((((((((((.(((..(((((..((..((......((((.............((((....))))))))....))..))..))))).....))).))))))))))))))))))).))))))))))))))))))) ....................UUCCACAGCUUUCUUGAACUU....................................................................................................................... ghi-miR396d .......................................................................................................................GCUCAAGAAAGCUGUGGGAAA.................... ghi-miR396d* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.1414; fiber: 0.5861; shoot apical: 0.0008; cotyledon: 0.0161; cotton boll: 0.0663; callus: 0.0031; leaf: 0.1501; anthers: 0.0067; seedlings: 0.0293 | Tau: 0.9294 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |