CoNCRAtlas


CoNCRAtlas ID CoMIRGH103
Mature miRNA sequence UUAGAUUCACGCACAAACUCG
Locus A12:81202790-81202888(-)
Alignment 
Displayed Location: A12:81202778-81202901 Strand: -
AAAAGAAGAGCCAUAUUUCGGGUUUUGUGCGUGAAUCUAAUAAAACUGUAAUCCACACACAAAAAAUGUGGAUUUGUUUCAUAUUAGAUUCACGCACAAACUCGUAGUCUGUCUUUUCACUAAU
....((((((.((.(((.(((((((.((((((((((((((((((((...((((((((.........)))))))).))))..))))))))))))))))))))))).))).)).))))))......
...................................................................................UUAGAUUCACGCACAAACUCG.................... ghi-miR403b
....................GGUUUUGUGCGUGAAUCUAAUA.................................................................................. ghi-miR403b*
miRNA family miR403

Expression profile

Tissue specificity indexovule: 0.0217; fiber: 0.0158; shoot apical: 0.0122; ovule and fiber: 0.0391; cotyledon: 0.239; cotton boll: 0.0005; callus: 0.2278; leaf: 0.1552; anthers: 0.0174; hypocotyls: 0.0249; seedlings: 0.2463 | Tau: 0.694

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH18393, CoLNCGH18393, CoLNCGH43637, CoLNCGH43638, CoLNCGH43639, CoLNCGH43640, CoLNCGH18391, CoLNCGH18392, CoLNCGH15608, CoLNCGH15609
Target CDS Gh_A05G356600.1, Gh_A08G253100.1, Gh_D08G244200.1, Gh_A10G239700.1, Gh_A10G239700.1, Gh_Contig00964G000100.1, Gh_Contig00712G000300.1, Gh_Contig00963G001400.1, Gh_A13G240800.1, Gh_D04G045400.1
sORF
Reference
PMID Title
No references available