CoNCRAtlas


CoNCRAtlas ID CoMIRGH101
Mature miRNA sequence ACAAGGAAGCAUGUGGUCUAGCAG
Locus A12:6159598-6159866(-)
Alignment 
Displayed Location: A12:6159633-6159837 Strand: -
UAUUGUGUUAAGUAAAUGACACAAGGAAGCAUGUGGUCUAGCAGUUGUGGCGUCAUUAAGGUUGCAAAGGAGCCUAGGUUCAAGUCCUGGAACACUAAAAUAAAUUACAAGAGCCAAGAUUUGAACCCAGGCUCCCUUGUAACCUUAAUGACUCCACAACCACUAGACAACAUGCUUCAUUGUGUCAUUUACUUAACACAAUAAU
((((((((((((((((((((((((.(((((((((.((((((..(((((((.((((((((((((((((.(((((((.((((((((((.(((..(.................)..))).)))))))))).))))))).)))))))))))))))).)))))))..)))))).))))))))).))))))))))))))))))))))))))
....................ACAAGGAAGCAUGUGGUCUAGCAG................................................................................................................................................................. ghi-miRN19
.................................................................................................................................................................ACUAGACAACAUGCUUCAUUGUGU.................... ghi-miRN19*
miRNA family miRN19

Expression profile

Tissue specificity indexovule: 0.0222; fiber: 0.1156; shoot apical: 0.2733; ovule and fiber: 0.0961; cotyledon: 0.0083; cotton boll: 0.0404; callus: 0.0558; leaf: 0.0401; anthers: 0.239; hypocotyls: 0.0978; seedlings: 0.0114 | Tau: 0.7341

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH04630, CoLNCGH04627, CoLNCGH04624, CoLNCGH04631, CoLNCGH04632, CoLNCGH31260, CoLNCGH30971, CoLNCGH05904, CoLNCGH32292, CoLNCGH32291
Target CDS Gh_D02G243800.1, Gh_A03G227100.1, Gh_A03G227200.1, Gh_A03G227200.2, Gh_A12G044700.1, Gh_D02G243700.1, Gh_D12G029800.1, Gh_D12G029800.2, Gh_D02G130700.1, Gh_A03G120000.1
sORF
Reference
PMID Title
No references available