| CoNCRAtlas ID | CoMIRGH100 |
|---|---|
| Mature miRNA sequence | UGAAGCUGCCAGCAUGAUCUA |
| Locus | A12:364060-364158(-) |
| Alignment | Displayed Location: A12:364045-364173 Strand: - GAAGUCUGCAAGGGAAAAAGUGAAGCUGCCAGCAUGAUCUAUCUUCGGUUAGUAAGAUGCGGAUGCUAUAUUGCUAACCCUAGCUAGGUCAUGCUGCGACAGCCUCACUCCUUCCUACUUGGGGCCCAA ).)))).))..(((((..(((((.(((((((((((((((((.((..(((((((((...((....))....)))))))))..)).)))))))))))).).)))).)))))..)))))..((((((..... ....................UGAAGCUGCCAGCAUGAUCUA........................................................................................ ghi-miR167b ......................................................................................GGUCAUGCUGCGACAGCCUCACU.................... ghi-miR167b* |
| miRNA family | miR167 |
Expression profile
| Tissue specificity index | ovule: 0.0007; fiber: 0.0181; shoot apical: 0.6596; ovule and fiber: 0.1369; cotyledon: 0.0005; cotton boll: 0.0026; callus: 0.0002; leaf: 0.0066; anthers: 0.0389; hypocotyls: 0.1351; seedlings: 0.0009 | Tau: 0.9484 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH06214, CoLNCGH28913, CoLNCGH28914, CoLNCGH06213, CoLNCGH32636, CoLNCGH32635, CoLNCGH19449, CoLNCGH20919, CoLNCGH20920, CoLNCGH43891 |
|---|
| Target CDS | Gh_A06G099400.1, Gh_D06G098700.1, Gh_A12G108400.1, Gh_A05G330000.1, Gh_D04G077800.1, Gh_A05G055100.1, Gh_D05G071400.1, Gh_D13G024500.1, Gh_D09G255600.1, Gh_A13G022600.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |