CoNCRAtlas


CoNCRAtlas ID CoMIRGH099
Mature miRNA sequence UUCCCGAGGCCACCCAUUCCAG
Locus A12:12512952-12513192(+)
Alignment 
Displayed Location: A12:12513005-12513131 Strand: +
UUGAGCUACUGGAAAUUACAGGAAUGGGGUCUUUGGGAUGAACCAUUCGAAAGCUUUUCAUCGUUUUAGUCAUAAAUUGAAGUUCUUCCCGAGGCCACCCAUUCCAGUGAUUUCCAGAGGCUUAUCC
.((((((.(((((((((((.(((((((((.((((((((.((((..(((((((((........))))..........))))))))).)))))))).).)))))))).))))))))))).)))))))))
.....................................................................................UUCCCGAGGCCACCCAUUCCAG.................... ghi-miR1183a
....................GGAAUGGGGUCUUUGGGAUGA...................................................................................... ghi-miR1183a*
miRNA family miR1183

Expression profile

Tissue specificity indexovule: 0.0844; fiber: 0.3638; shoot apical: 0.0653; ovule and fiber: 0.0243; cotyledon: 0.1078; cotton boll: 0.0266; callus: 0.0065; leaf: 0.0638; anthers: 0.0663; hypocotyls: 0.1634; seedlings: 0.0277 | Tau: 0.8251
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A121251280512514026+CoLNCGH42747
Target lncRNA CoLNCGH08031, CoLNCGH39769, CoLNCGH46198, CoLNCGH20453, CoLNCGH20452, CoLNCGH20449, CoLNCGH20450, CoLNCGH20451, CoLNCGH20448, CoLNCGH20447
Target CDS Gh_D11G144200.1, Gh_A11G142700.1, Gh_D07G140000.1, Gh_A07G140300.1, Gh_D10G132600.1, Gh_D08G032700.1, Gh_A08G033100.1, Gh_Contig00266G000100.1, Gh_A07G179700.1, Gh_A04G128100.1
sORF
Reference
PMID Title
0NA