CoNCRAtlas


CoNCRAtlas ID CoMIRGH098
Mature miRNA sequence UUUGGAUUGAAGGGAGCUCUA
Locus A12:104922234-104922477(+)
Alignment 
Displayed Location: A12:104922217-104922436 Strand: +
AAAGGUGAGACAAAGGGGUGGAGCUCCUUGAAGUCCAAUAGAGGGUCUUGCAGGGUAUAUAGAGCUGCUGAGCUAUGGAUCCCUAAAGCUCUAUCCCAUAUAUAUAACUUCUAAAAGAAGGGAUAGACUUUUGGCUUGCAUAUCUCAGGAGCUGCAUUACCAAAAAUGUCAGAUCCUUGUUUGGAUUGAAGGGAGCUCUACACUUAGUCACUGAUCUUUG
.((((((((((...(((((((((((((((..(((((((..((((((((.(((.((((.....((((.(((((.((((.(..((.((((.((((((((......................)))))))))))).))..).)))).))))).))))....)))).....))).))))))))..)))))))..))))))))))))....(((((..((((...(
...................................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUA.................... ghi-miR159a
....................GAGCUCCUUGAAGUCCAAUAG................................................................................................................................................................................... ghi-miR159a*
miRNA family miR159

Expression profile

Tissue specificity indexovule: 0.1797; fiber: 0.0615; shoot apical: 0.0067; ovule and fiber: 0.0102; cotyledon: 0.005; cotton boll: 0.6518; callus: 0.0017; leaf: 0.048; anthers: 0.0027; hypocotyls: 0.0294; seedlings: 0.0033 | Tau: 0.9466
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A12104921659104923389+CoLNCGH44577
A12104921810104923389+CoLNCGH44578
A12104921811104923389+CoLNCGH44579
A12104921833104923389+CoLNCGH44580
A12104921858104923389+CoLNCGH44581
A12104921859104923389+CoLNCGH44582
A12104921899104923389+CoLNCGH44583
Target lncRNA CoLNCGH12412, CoLNCGH12412, CoLNCGH09840, CoLNCGH09841, CoLNCGH20575, CoLNCGH11516, CoLNCGH11517, CoLNCGH28536, CoLNCGH28541, CoLNCGH01407
Target CDS Gh_D09G186900.1, Gh_D13G158800.1, Gh_A13G155800.1, Gh_A08G159900.1, Gh_A11G028100.1, Gh_A11G028100.2, Gh_D11G028400.1, Gh_D11G028400.2, Gh_D08G041100.1, Gh_D06G218200.1
sORF
Reference
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PMID Title