| CoNCRAtlas ID | CoMIRGH098 |
|---|---|
| Mature miRNA sequence | UUUGGAUUGAAGGGAGCUCUA |
| Locus | A12:104922234-104922477(+) |
| Alignment | Displayed Location: A12:104922217-104922436 Strand: + AAAGGUGAGACAAAGGGGUGGAGCUCCUUGAAGUCCAAUAGAGGGUCUUGCAGGGUAUAUAGAGCUGCUGAGCUAUGGAUCCCUAAAGCUCUAUCCCAUAUAUAUAACUUCUAAAAGAAGGGAUAGACUUUUGGCUUGCAUAUCUCAGGAGCUGCAUUACCAAAAAUGUCAGAUCCUUGUUUGGAUUGAAGGGAGCUCUACACUUAGUCACUGAUCUUUG .((((((((((...(((((((((((((((..(((((((..((((((((.(((.((((.....((((.(((((.((((.(..((.((((.((((((((......................)))))))))))).))..).)))).))))).))))....)))).....))).))))))))..)))))))..))))))))))))....(((((..((((...( ...................................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUA.................... ghi-miR159a ....................GAGCUCCUUGAAGUCCAAUAG................................................................................................................................................................................... ghi-miR159a* |
| miRNA family | miR159 |
Expression profile
| Tissue specificity index | ovule: 0.1797; fiber: 0.0615; shoot apical: 0.0067; ovule and fiber: 0.0102; cotyledon: 0.005; cotton boll: 0.6518; callus: 0.0017; leaf: 0.048; anthers: 0.0027; hypocotyls: 0.0294; seedlings: 0.0033 | Tau: 0.9466 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH12412, CoLNCGH12412, CoLNCGH09840, CoLNCGH09841, CoLNCGH20575, CoLNCGH11516, CoLNCGH11517, CoLNCGH28536, CoLNCGH28541, CoLNCGH01407 |
|---|
| Target CDS | Gh_D09G186900.1, Gh_D13G158800.1, Gh_A13G155800.1, Gh_A08G159900.1, Gh_A11G028100.1, Gh_A11G028100.2, Gh_D11G028400.1, Gh_D11G028400.2, Gh_D08G041100.1, Gh_D06G218200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |