| CoNCRAtlas ID | CoMIRGH096 |
|---|---|
| Mature miRNA sequence | UCCAAAGGGAUCGCAUUGAUCU |
| Locus | A12:103892578-103892799(+) |
| Alignment | Displayed Location: A12:103892633-103892793 Strand: + UCCUAGUGCAGGUGGAGAGCUCCAAAGGGAUCGCAUUGAUCUAAUGUUGAUGAUGGGCUUCCUUGAAAACCUUAACGAAUUAAUUAUUGAUUUUUGUUGAUUCAGUUCAGUACCCAUUGGAUCAUGCGAUCCCUUCGGAAUUUUCCAUCGCUAGCUCUAAA .....).))))((((((((.(((.((((((((((((.(((((((((....(((.((..(((...)))..)).....((((((((...........))))))))...))).....))))))))))))))))))))).))).)))))))).(((((((..... ....................UCCAAAGGGAUCGCAUUGAUCU....................................................................................................................... ghi-miR172e ........................................................................................................................AUCAUGCGAUCCCUUCGGAAU.................... ghi-miR172e* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | ovule: 0.0138; fiber: 0.1425; shoot apical: 0.0039; ovule and fiber: 0.0113; cotyledon: 0.0965; cotton boll: 0.1354; callus: 0.0217; leaf: 0.0439; anthers: 0.1927; hypocotyls: 0.0262; seedlings: 0.3121 | Tau: 0.7796 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH39329, CoLNCGH45380, CoLNCGH45381, CoLNCGH09277, CoLNCGH39666, CoLNCGH39667, CoLNCGH39668, CoLNCGH00821, CoLNCGH00820, CoLNCGH27132 |
|---|
| Target CDS | Gh_D11G068200.2, Gh_A11G068600.1, Gh_D07G255600.1, Gh_D11G068200.1, Gh_A07G257700.1, Gh_A08G050800.1, Gh_A08G080300.1, Gh_A08G134700.1, Gh_A11G125100.1, Gh_D08G075500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 31138116 | Identification and profiling of upland cotton microRNAs at fiber initiation stage under exogenous IAA application |