CoNCRAtlas


CoNCRAtlas ID CoMIRGH095
Mature miRNA sequence CGAGCCGAAUCAAUAUCACUC
Locus A12:102973572-102973689(+)
Alignment 
Displayed Location: A12:102973595-102973700 Strand: +
GUGGGAGGAGUAGACACGACGUGAUAUUGGUUCGGCUCAUCUUAUUGUGAUUAAAAAUUUCAAGGCGAGCCGAAUCAAUAUCACUCAUGUAUGCUUUUUUAUUAUU
)).)))))((((.(((.((.((((((((((((((((((.((((...((........))...)))).)))))))))))))))))))).))).))))...........
.................................................................CGAGCCGAAUCAAUAUCACUC.................... ghi-miR171e
....................GUGAUAUUGGUUCGGCUCAUC................................................................. ghi-miR171e*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.0058; fiber: 0.0319; shoot apical: 0.0473; ovule and fiber: 0.0024; cotton boll: 0.0046; callus: 0.0004; leaf: 0.0561; anthers: 0.017; hypocotyls: 0.8345 | Tau: 0.9802
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A12102973568102975429+CoLNCGH44504
Target lncRNA CoLNCGH44504, CoLNCGH44504, CoLNCGH29016, CoLNCGH02014, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH06349
Target CDS Gh_A06G047700.1, Gh_D06G047200.1, Gh_D05G234400.1, Gh_A05G217600.1, Gh_A02G199300.1, Gh_D05G015600.1, Gh_D10G064300.1, Gh_A10G050700.1, Gh_D13G239700.1, Gh_D04G135400.1
sORF
Reference
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PMID Title