CoNCRAtlas


CoNCRAtlas ID CoMIRGH093
Mature miRNA sequence GAACGUUGUCUGGCCCGAGGA
Locus A11:9912140-9912270(+)
Alignment 
Displayed Location: A11:9912127-9912288 Strand: +
AGGAGCUACUCUUUUGAGGGGAACGUUGUCUGGCCCGAGGACACCAGUUCCAUUUCCAUUUUGCCUCUACGGAAGCUGUUCGUCACUUGGUUGUUAAAUGGUUUGAGCUUGUGCCAGUGUUGUCGGACCAGGCUUCAUUCCUCCCAAUUAUUGCUCCCAUAU
.(((((.......(((.((((((.(..((((((.((((.(((((((((((.....((((((.((..(((((((.....))))).....))..)).))))))...)))).)).....))))).)))).))))))..).)))))).))).....)))))(((((
....................GAACGUUGUCUGGCCCGAGGA......................................................................................................................... ghi-miRN18
.........................................................................................................................GUCGGACCAGGCUUCAUUCCU.................... ghi-miRN18*
miRNA family miRN18

Expression profile

Tissue specificity indexovule: 0.0226; fiber: 0.0129; shoot apical: 0.2467; ovule and fiber: 0.0243; cotyledon: 0.001; cotton boll: 0.0017; callus: 0.0071; leaf: 0.0406; anthers: 0.5563; hypocotyls: 0.0869 | Tau: 0.9202
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A1199114909914507+CoLNCGH39563
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH04460, CoLNCGH30892, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH45906
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1, Gh_D05G102000.1
sORF
Reference
PMID Title
0NA