CoNCRAtlas


CoNCRAtlas ID CoMIRGH090
Mature miRNA sequence UGUCGCAGGAGCGAUGGCACUG
Locus A11:6472114-6472203(+)
Alignment 
Displayed Location: A11:6472096-6472217 Strand: +
ACUGGCGGUUGGGGGAAUCUUGUCGCAGGAGCGAUGGCACUGCCUUUUGUUUUUGUUUUCCUUGUAUAGCAACACAGCACAGUGCCAUCGGCCUGCGACAAGGUACCCUGCAACUUCCUUUA
(((((.(((((((((.(((((((((((((..(((((((((((....((((..(((((..........))))).))))..))))))))))).))))))))))))).)))).))))).))....
....................UGUCGCAGGAGCGAUGGCACUG................................................................................ ghi-miR3627b
.................................................................................GUGCCAUCGGCCUGCGACAAG.................... ghi-miR3627b*
miRNA family miR3627

Expression profile

Tissue specificity indexovule: 0.0129; fiber: 0.0063; shoot apical: 0.0077; ovule and fiber: 0.0004; cotyledon: 0.0732; cotton boll: 0.0016; callus: 0.0336; leaf: 0.0955; anthers: 0.3764; hypocotyls: 0.011; seedlings: 0.3815 | Tau: 0.8379

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH49723, CoLNCGH36839, CoLNCGH03797, CoLNCGH03796, CoLNCGH03795, CoLNCGH03794, CoLNCGH34989, CoLNCGH34988, CoLNCGH34986, CoLNCGH34985
Target CDS Gh_A12G012200.1, Gh_D13G243400.1, Gh_A02G196800.1, Gh_A05G147100.1, Gh_D05G162700.1, Gh_D05G162700.3, Gh_D10G123100.1, Gh_A11G139900.1, Gh_D10G059400.1, Gh_A06G115500.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development