CoNCRAtlas


CoNCRAtlas ID CoMIRGH086
Mature miRNA sequence ACUCUCCCUCAAGGGCUUCCUG
Locus A11:1949030-1949314(+)
Alignment 
Displayed Location: A11:1949022-1949125 Strand: +
UUGGUUCCUCACUCUCCCUCAAGGGCUUCCUGCAAUGCCUCCGAAUACUGCCCUGGCAAUGCUGGAAAUCUUUGGGGAGAGUGAAAAAAAACUUGCCUUGCUAA
..((((((((((((((((.((((((.((((.(((.((((...............)))).))).)))).))))))))))))))))...............((((.
..........ACUCUCCCUCAAGGGCUUCCUG........................................................................ ghi-miR477b
...............................................................GGAAAUCUUUGGGGAGAGUGA.................... ghi-miR477b*
miRNA family miR477

Expression profile

Tissue specificity indexovule: 0.041; fiber: 0.7085; shoot apical: 0.01; ovule and fiber: 0.001; cotyledon: 0.0007; cotton boll: 0.0893; callus: 0.0032; leaf: 0.0222; anthers: 0.0053; hypocotyls: 0.1178; seedlings: 0.0009 | Tau: 0.9588

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH39075, CoLNCGH39075, CoLNCGH39075, CoLNCGH52390, CoLNCGH52389, CoLNCGH44441, CoLNCGH44442, CoLNCGH35668, CoLNCGH35673, CoLNCGH35672
Target CDS Gh_A09G272500.1, Gh_D09G261700.1, Gh_D03G014200.1, Gh_A02G197000.1, Gh_A09G207900.1, Gh_A02G051100.1, Gh_D02G055700.1, Gh_D01G124000.1, Gh_A01G124700.1, Gh_A01G223800.1
sORF
Reference
PMID Title
No references available