| CoNCRAtlas ID | CoMIRGH085 |
|---|---|
| Mature miRNA sequence | UGACAAUGAGAGAGAGCACGC |
| Locus | A11:17203251-17203341(-) |
| Alignment | Displayed Location: A11:17203238-17203357 Strand: - GAUUGACACGCAUUGUCAAUUGACAAUGAGAGAGAGCACGCUUGUUGCCAUUCAUGCAAGGGCAUGGAUGUAUACAAGUGUGCUCUCUGUCGUUGUCAUAUGAUUUGUUCAAAGCUGUCA ((.(((((.((.((((((..(((((((((.(((((((((((((((...(((((((((....)))))))))...))))))))))))))).)))))))))..)))......))).))))))) ....................UGACAAUGAGAGAGAGCACGC............................................................................... ghi-miR535b ...............................................................................GUGCUCUCUGUCGUUGUCAUA.................... ghi-miR535b* |
| miRNA family | miR535 |
Expression profile
| Tissue specificity index | ovule: 0.0247; fiber: 0.1142; shoot apical: 0.3256; ovule and fiber: 0.0584; cotyledon: 0.0135; cotton boll: 0.0397; callus: 0.0336; leaf: 0.1342; anthers: 0.1122; hypocotyls: 0.1357; seedlings: 0.0082 | Tau: 0.7929 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH39866, CoLNCGH39866, CoLNCGH30288, CoLNCGH30287, CoLNCGH30286, CoLNCGH30284, CoLNCGH30285, CoLNCGH07236, CoLNCGH07235, CoLNCGH30283 |
|---|
| Target CDS | Gh_A07G099000.1, Gh_A01G164500.1, Gh_A07G099000.1, Gh_D11G154200.1, Gh_D11G154200.1, Gh_D07G227700.1, Gh_A03G135600.1, Gh_D02G164900.1, Gh_A11G013700.1, Gh_A10G132500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |