CoNCRAtlas


CoNCRAtlas ID CoMIRGH084
Mature miRNA sequence UGGAGAAGCAGGGCACGUGCA
Locus A11:11958348-11958459(+)
Alignment 
Displayed Location: A11:11958330-11958464 Strand: +
GCGGGUGCGAAGCUCCUUGUUGGAGAAGCAGGGCACGUGCAGAAAGUGCUUGAAUUGGUGCCACAUAUAUCAUAUGUAUAUAUAUCACCUUCUGCACGUGCUCCCUUUCUCCAACAUGGGUUCCACACCUAUUAC
))(((((.(.(((.((.(((((((((((..((((((((((((((............((((....((((((.....))))))....))))))))))))))))))..))))))))))).))))).).))))).....
....................UGGAGAAGCAGGGCACGUGCA.............................................................................................. ghi-miR164a
..............................................................................................CACGUGCUCCCUUUCUCCAAC.................... ghi-miR164a*
miRNA family miR164

Expression profile

Tissue specificity indexovule: 0.4148; fiber: 0.0085; shoot apical: 0.3788; ovule and fiber: 0.0008; cotyledon: 0.0011; cotton boll: 0.004; callus: 0.0129; leaf: 0.0041; anthers: 0.1735; seedlings: 0.0015 | Tau: 0.8589

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH18449, CoLNCGH18449, CoLNCGH41710, CoLNCGH17400, CoLNCGH35940, CoLNCGH49910, CoLNCGH35939, CoLNCGH17399, CoLNCGH17398, CoLNCGH17397
Target CDS Gh_A11G035600.1, Gh_D11G035900.1, Gh_A12G201000.1, Gh_D12G194500.1, Gh_D13G169000.1, Gh_A13G167200.1, Gh_A11G324400.1, Gh_D11G325000.1, Gh_A01G060000.1, Gh_D01G053800.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development