CoNCRAtlas


CoNCRAtlas ID CoMIRGH083
Mature miRNA sequence CAAGAAAAGAAGUCGGGAGAG
Locus A11:118451762-118451989(+)
Alignment 
Displayed Location: A11:118451786-118451915 Strand: +
CCUCCAUUGUUGGCAGGAAGCAAGAAAAGAAGUCGGGAGAGAGUUUUCGAUCGGUUCCCUUUAGCUUCUCAAAACUUAUCUGAAAUUCUUUCCCGGCUUCUUUUCUUGCUUUCGUUUUAUUGUUCGUUUG
(..(((....)))..((((((((((((((((((((((((((((((((.(((.((((................)))).))).))))))))))))))))))))))))))))))))........)))))))))
....................CAAGAAAAGAAGUCGGGAGAG......................................................................................... ghi-miR7508a
.........................................................................................UUCCCGGCUUCUUUUCUUGCU.................... ghi-miR7508a*
miRNA family miR7508

Expression profile

Tissue specificity indexovule: 0.1176; fiber: 0.1523; shoot apical: 0.1479; ovule and fiber: 0.0307; cotyledon: 0.0305; cotton boll: 0.0442; callus: 0.0697; leaf: 0.1135; anthers: 0.0627; hypocotyls: 0.2051; seedlings: 0.0259 | Tau: 0.6123

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH42146, CoLNCGH42147, CoLNCGH42145, CoLNCGH42172, CoLNCGH42171, CoLNCGH42170, CoLNCGH42168, CoLNCGH42169, CoLNCGH28200, CoLNCGH28201
Target CDS Gh_D11G376600.1, Gh_A11G368600.1, Gh_A06G104300.1, Gh_D05G013700.1, Gh_A03G072100.1, Gh_D03G125000.1, Gh_A06G058800.3, Gh_D06G057000.2, Gh_A04G112200.1, Gh_D04G150400.1
sORF
Reference
PMID Title
No references available