CoNCRAtlas


CoNCRAtlas ID CoMIRGH082
Mature miRNA sequence UUUGUACUUUAGAUGUCUCUU
Locus A11:118438026-118438253(+)
Alignment 
Displayed Location: A11:118438029-118438214 Strand: +
GGGUCUUCAACAGCUUGAGAGGGGCAUCUGAAGUAUAGAAUGACGAAUGAACUUCCAUUGAUACCCGAUCAACUUAGUGUUGGAAGGAAGCAAGAUCGUUUCCCUGUUUCUUUUUUUGCUUCUGUCGGUCAGAUAGUUCGUCUCCUUUGUACUUUAGAUGUCUCUUCCAUGCUGUUUGAAGUUGUU
)(((((((((((((.((.(((((((((((((((((((((..(((((((...(((((((((((.....)))))........))))))(((((((((..................)))))))))((((.....)))))))))))...))))))))))))))))))))).)).))))))((((.(((((
.................................................................................................................................................UUUGUACUUUAGAUGUCUCUU.................... ghi-miR1378
....................GGGGCAUCUGAAGUAUAGAAU................................................................................................................................................. ghi-miR1378*
miRNA family miR1378

Expression profile

Tissue specificity indexovule: 0.263; fiber: 0.1176; shoot apical: 0.0417; ovule and fiber: 0.0256; cotyledon: 0.0983; cotton boll: 0.0815; callus: 0.0791; leaf: 0.1743; anthers: 0.0327; hypocotyls: 0.0649; seedlings: 0.0213 | Tau: 0.7197

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH42116, CoLNCGH42115, CoLNCGH17368, CoLNCGH17367, CoLNCGH17369, CoLNCGH00546, CoLNCGH00545, CoLNCGH17368, CoLNCGH42122, CoLNCGH00542
Target CDS Gh_A11G368500.1, Gh_D11G376500.1, Gh_D11G377400.1, Gh_A11G360100.1, Gh_A11G360100.2, Gh_D03G054700.1, Gh_A08G028800.1, Gh_A08G028800.2, Gh_D08G028400.1, Gh_A12G093500.1
sORF
Reference
PMID Title
No references available