| CoNCRAtlas ID | CoMIRGH080 |
|---|---|
| Mature miRNA sequence | AUGCACUGCCUCUUCCCUGGC |
| Locus | A11:10644326-10644586(-) |
| Alignment | Displayed Location: A11:10644427-10644544 Strand: - AUGGGAGAGACAGACAAAGACAGGGAACAGGCUGAGCAUGGAUGGAUCUACCAACUGAUUCUGUUGUUUCUCCGCCCAUGCACUGCCUCUUCCCUGGCUCUGCCUCCUCCAUUUUUUU (((((.(((.((((......(((((((.((((.(.((((((.((((.....((((.......))))....)))).)))))).).)))).)))))))..)))).))).))))))))))) .............................................................................AUGCACUGCCUCUUCCCUGGC.................... ghi-miR408 ....................CAGGGAACAGGCUGAGCAUGG............................................................................. ghi-miR408* |
| miRNA family | miR408 |
Expression profile
| Tissue specificity index | ovule: 0.0041; fiber: 0.078; shoot apical: 0.0053; ovule and fiber: 0.002; cotyledon: 0.0497; cotton boll: 0.0199; callus: 0.7108; leaf: 0.082; anthers: 0.002; hypocotyls: 0.0012; seedlings: 0.045 | Tau: 0.9593 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH33426, CoLNCGH51969, CoLNCGH28332, CoLNCGH46576, CoLNCGH41089, CoLNCGH41090, CoLNCGH41092, CoLNCGH41094, CoLNCGH41095, CoLNCGH41093 |
|---|
| Target CDS | Gh_D05G241800.1, Gh_A05G225800.1, Gh_A07G020700.1, Gh_D07G021900.1, Gh_A08G189600.1, Gh_D08G186400.1, Gh_D02G083500.1, Gh_A04G155000.1, Gh_A01G198600.1, Gh_D01G196500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |