| CoNCRAtlas ID | CoMIRGH079 |
|---|---|
| Mature miRNA sequence | UGAAGCUGCCAGCAUGAUCUA |
| Locus | A11:102504754-102504936(-) |
| Alignment | Displayed Location: A11:102504820-102504943 Strand: - CAUCACGCACCACUGAUAGUUGAAGCUGCCAGCAUGAUCUAGCUAUCCAUCCCUCCUUUAGUUUAUCUUUCAGGGAGAAAACUAGAUCAUAUGGCAGCUUCAUCUGUCCAUGGUAGCAUGAACA ..(((.((((((..(((((.(((((((((((..(((((((((...((..(((((.....((.....))...)))))))...))))))))).))))))))))).)))))..)))).)).)))... ....................UGAAGCUGCCAGCAUGAUCUA................................................................................... ghi-miR167a ....................................................................................GAUCAUAUGGCAGCUUCAUC.................... ghi-miR167a* |
| miRNA family | miR167 |
Expression profile
| Tissue specificity index | ovule: 0.0031; fiber: 0.0148; shoot apical: 0.7838; cotyledon: 0.0087; cotton boll: 0.0002; callus: 0.0005; leaf: 0.1047; anthers: 0.0087; hypocotyls: 0.0676; seedlings: 0.0079 | Tau: 0.9724 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH06214, CoLNCGH28913, CoLNCGH28914, CoLNCGH06213, CoLNCGH06553, CoLNCGH06554, CoLNCGH06555, CoLNCGH06556, CoLNCGH06557, CoLNCGH06558 |
|---|
| Target CDS | Gh_A06G203700.1, Gh_D06G208800.1, Gh_D06G208800.2, Gh_D01G190800.1, Gh_A08G146500.1, Gh_D08G145300.1, Gh_D08G145300.2, Gh_A08G040300.1, Gh_D08G039700.1, Gh_A03G013500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |