| CoNCRAtlas ID | CoMIRGH078 |
|---|---|
| Mature miRNA sequence | UUGAGUGCAGCGUUGAUGAGC |
| Locus | A10:1271575-1271639(-) |
| Alignment | Displayed Location: A10:1271556-1271658 Strand: -
CUCAGAUUGAAGAAACAUUGUUGAGUGCAGCGUUGAUGAGCUUUUUUUCUGUUUUGAUAAGUUCAUCAACACUGCAUUUAACGAUGUUUCUUUUUGCUCUUUC
.)))))))((((((((((((((((((((((.((((((((((((.((.........)).)))))))))))).))))))))))))))))))))))..........
....................UUGAGUGCAGCGUUGAUGAGC.............................................................. ghi-miR397b
..............................................................UCAUCAACACUGCAUUUAACa.................... ghi-miR397b*
|
| miRNA family | miR397 |
Expression profile
| Tissue specificity index | ovule: 0.0161; fiber: 0.6064; shoot apical: 0.007; ovule and fiber: 0.0066; cotyledon: 0.0103; cotton boll: 0.3072; callus: 0.0207; leaf: 0.0134; anthers: 0.0083; seedlings: 0.0041 | Tau: 0.9351 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH13012, CoLNCGH13647, CoLNCGH13646, CoLNCGH13645, CoLNCGH13644, CoLNCGH13643, CoLNCGH13656, CoLNCGH13655, CoLNCGH13654, CoLNCGH13653 |
|---|
| Target CDS | Gh_A13G032800.1, Gh_A13G032900.1, Gh_A13G099700.1, Gh_D13G103500.1, Gh_D13G034200.1, Gh_D13G034400.1, Gh_A13G024900.1, Gh_D13G026700.1, Gh_A09G174300.2, Gh_D04G147100.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |