CoNCRAtlas


CoNCRAtlas ID CoMIRGH077
Mature miRNA sequence AGAAUCCUGAUGAUGCUGCAG
Locus A10:111539301-111539388(+)
Alignment 
Displayed Location: A10:111539267-111539407 Strand: +
AACAGUCACUGUUUGCUGCUGCAGCAUUAUCAAGAUUCACAAGAAGCAUUUUAGGGUCUUUUUUGACUGAUUGAUCAAUCAAUAAGCCCUUUUAUGAUUGAGAAUCCUGAUGAUGCUGCAGUGGCAAUAAGUGGCUAAAUA
...(((((((..((((((((((((((((((((.(((((.(((....(((...((((.(((..((((.(((....))).)))).)))))))...))).))).))))).))))))))))))))))))))..))))))).....
....................................................................................................AGAAUCCUGAUGAUGCUGCAG.................... ghi-miR172d
....................GCAGCAUUAUCAAGAUUCACA.................................................................................................... ghi-miR172d*
miRNA family miR172

Expression profile

Tissue specificity indexovule: 0.3352; fiber: 0.0001; ovule and fiber: 0.6618; cotton boll: 0.0028; anthers: 0.0001 | Tau: 0.9489
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A10111538952111541175+CoLNCGH38771
A10111539006111541175+CoLNCGH38772
Target lncRNA CoLNCGH37203, CoLNCGH37202, CoLNCGH13577, CoLNCGH13578, CoLNCGH13579, CoLNCGH11963, CoLNCGH34064, CoLNCGH34055, CoLNCGH34056, CoLNCGH34057
Target CDS Gh_A08G001700.1, Gh_D08G002300.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_D10G236700.1, Gh_A03G047000.1, Gh_A05G087000.1, Gh_D05G098700.1, Gh_A10G213200.1, Gh_D05G092100.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development