CoNCRAtlas


CoNCRAtlas ID CoMIRGH073
Mature miRNA sequence UUUGUUUAUGGUCAUCUAAGC
Locus A10:107674538-107674666(+)
Alignment 
Displayed Location: A10:107674526-107674686 Strand: +
AAAAUGCAUUAUUGAAUGUGUUUGUUUAUGGUCAUCUAAGCCAUUUUUCAUCUCGCCAAUUCUUUGUUCAAGCAGUUUUUGGAUAAUCGAACCGAUAGAAUACACCCGCAGAAAUGAUGUUUAGAUGACCAUCAACAAACAACUUCAUCUUAUUGCAUCAA
...(((((.((.((((..((((((((.(((((((((((((((((((((..........((((((((((((((.....)))))))))..........)))))........)))))))..)))))))))))))).))))))))..))))...)).)))))...
....................UUUGUUUAUGGUCAUCUAAGC........................................................................................................................ ghi-miR827a
........................................................................................................................UUAGAUGACCAUCAACAAACA.................... ghi-miR827a*
miRNA family miR827

Expression profile

Tissue specificity indexovule: 0.0135; fiber: 0.006; shoot apical: 0.0039; ovule and fiber: 0.0183; cotyledon: 0.2619; cotton boll: 0.0066; callus: 0.0565; leaf: 0.2506; anthers: 0.0038; hypocotyls: 0.0063; seedlings: 0.3724 | Tau: 0.8315
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A10107674199107678196+CoLNCGH38648
Target lncRNA CoLNCGH14816, CoLNCGH14816, CoLNCGH14815, CoLNCGH14789, CoLNCGH14815, CoLNCGH14814, CoLNCGH38648, CoLNCGH14813, CoLNCGH14814, CoLNCGH38648
Target CDS Gh_D04G205400.1, Gh_A03G249000.1, Gh_D05G096900.1, Gh_A04G160500.1, Gh_D02G264400.1, Gh_A13G234000.1, Gh_D06G086600.1, Gh_D07G090100.1, Gh_A07G091500.1, Gh_D06G073700.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)