| CoNCRAtlas ID | CoMIRGH073 |
|---|---|
| Mature miRNA sequence | UUUGUUUAUGGUCAUCUAAGC |
| Locus | A10:107674538-107674666(+) |
| Alignment | Displayed Location: A10:107674526-107674686 Strand: + AAAAUGCAUUAUUGAAUGUGUUUGUUUAUGGUCAUCUAAGCCAUUUUUCAUCUCGCCAAUUCUUUGUUCAAGCAGUUUUUGGAUAAUCGAACCGAUAGAAUACACCCGCAGAAAUGAUGUUUAGAUGACCAUCAACAAACAACUUCAUCUUAUUGCAUCAA ...(((((.((.((((..((((((((.(((((((((((((((((((((..........((((((((((((((.....)))))))))..........)))))........)))))))..)))))))))))))).))))))))..))))...)).)))))... ....................UUUGUUUAUGGUCAUCUAAGC........................................................................................................................ ghi-miR827a ........................................................................................................................UUAGAUGACCAUCAACAAACA.................... ghi-miR827a* |
| miRNA family | miR827 |
Expression profile
| Tissue specificity index | ovule: 0.0135; fiber: 0.006; shoot apical: 0.0039; ovule and fiber: 0.0183; cotyledon: 0.2619; cotton boll: 0.0066; callus: 0.0565; leaf: 0.2506; anthers: 0.0038; hypocotyls: 0.0063; seedlings: 0.3724 | Tau: 0.8315 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH14816, CoLNCGH14816, CoLNCGH14815, CoLNCGH14789, CoLNCGH14815, CoLNCGH14814, CoLNCGH38648, CoLNCGH14813, CoLNCGH14814, CoLNCGH38648 |
|---|
| Target CDS | Gh_D04G205400.1, Gh_A03G249000.1, Gh_D05G096900.1, Gh_A04G160500.1, Gh_D02G264400.1, Gh_A13G234000.1, Gh_D06G086600.1, Gh_D07G090100.1, Gh_A07G091500.1, Gh_D06G073700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |