| CoNCRAtlas ID | CoMIRGH072 |
|---|---|
| Mature miRNA sequence | UGAUUGAGUCGUGCCAAUAUC |
| Locus | A10:10177849-10177930(-) |
| Alignment | Displayed Location: A10:10177833-10177946 Strand: - CAAAGGUGGUGUACGAUGGAUGUUGGCACGGAUCAAUCGGAUCAAAUCUCUCAGUGGACUGAGUCCUUUAAUCUGAUUGAGUCGUGCCAAUAUCAAUCUCCCUCUCUCACACAU .(((((.((.(...(((.(((((((((((((.((((((((((.(((...(((((....)))))...))).)))))))))).))))))))))))).))).)))........(((( .........................................................................UGAUUGAGUCGUGCCAAUAUC.................... ghi-miR171d ....................UGUUGGCACGGAUCAAUCGGA......................................................................... ghi-miR171d* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0108; fiber: 0.287; shoot apical: 0.0921; ovule and fiber: 0.0123; cotyledon: 0.0122; cotton boll: 0.0712; callus: 0.0207; leaf: 0.2309; anthers: 0.1792; hypocotyls: 0.0506; seedlings: 0.0329 | Tau: 0.7516 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH17852, CoLNCGH30022, CoLNCGH30021, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH53012, CoLNCGH12978 |
|---|
| Target CDS | Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A07G067200.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |