CoNCRAtlas


CoNCRAtlas ID CoMIRGH070
Mature miRNA sequence UCGGACCAGGCUUCAUUCCCC
Locus A09:81254813-81254905(-)
Alignment 
Displayed Location: A09:81254798-81254922 Strand: -
UAUGCCUUCAACAGUUGAGGGGAAUGCUGUCUGGUUCGAGACCAUUCGUUCCGAAGGUCUUGGAAGACUCGGUUUCGAAUGAUCUCGGACCAGGCUUCAUUCCCCCUAACUCCGAAUAUUAUUAC
......(((...(((((.((((((((..(((((((((((((.((((((..((((..((((....))))))))...)))))).)))))))))))))..)))))))).)))))..))).........
....................................................................................UCGGACCAGGCUUCAUUCCCC.................... ghi-miR166d
....................GGAAUGCUGUCUGGUUCGAGA.................................................................................... ghi-miR166d*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.3723; fiber: 0.0729; shoot apical: 0.0326; ovule and fiber: 0.0124; cotyledon: 0.0338; cotton boll: 0.2098; callus: 0.0051; leaf: 0.1476; anthers: 0.0346; hypocotyls: 0.0492; seedlings: 0.0297 | Tau: 0.8314

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH30892, CoLNCGH04460, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH02813
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A12G088500.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)