CoNCRAtlas


CoNCRAtlas ID CoMIRGH069
Mature miRNA sequence AAGCUCAGGAGGGAUAGCGCC
Locus A09:75434355-75434438(+)
Alignment 
Displayed Location: A09:75434347-75434458 Strand: +
UAAGUAUAGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCUUCAGCCUGAUCCUCAUUAGCGCUAUCUAUCCUGAGUUACAUGGCUUCUUCUUGCUCUUGC
..((((.(((((((.((((..(((((((((.(((((((((.(..((.((((........)))).))..).))))))))).)))))))))..)))).)))))))))))...((
....................AAGCUCAGGAGGGAUAGCGCC....................................................................... ghi-miR390c
.......................................................................CGCUAUCUAUCCUGAGUUcCA.................... ghi-miR390c*
miRNA family miR390

Expression profile

Tissue specificity indexfiber: 0.3625; shoot apical: 0.3226; cotton boll: 0.1522; callus: 0.1139; leaf: 0.0195; anthers: 0.0293 | Tau: 0.8241
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A097543383575436231-CoLNCGH36101
Target lncRNA CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036
Target CDS Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G274300.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_D11G273000.1
sORF
Reference
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PMID Title