| CoNCRAtlas ID | CoMIRGH069 |
|---|---|
| Mature miRNA sequence | AAGCUCAGGAGGGAUAGCGCC |
| Locus | A09:75434355-75434438(+) |
| Alignment | Displayed Location: A09:75434347-75434458 Strand: +
UAAGUAUAGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCUUCAGCCUGAUCCUCAUUAGCGCUAUCUAUCCUGAGUUACAUGGCUUCUUCUUGCUCUUGC
..((((.(((((((.((((..(((((((((.(((((((((.(..((.((((........)))).))..).))))))))).)))))))))..)))).)))))))))))...((
....................AAGCUCAGGAGGGAUAGCGCC....................................................................... ghi-miR390c
.......................................................................CGCUAUCUAUCCUGAGUUcCA.................... ghi-miR390c*
|
| miRNA family | miR390 |
Expression profile
| Tissue specificity index | fiber: 0.3625; shoot apical: 0.3226; cotton boll: 0.1522; callus: 0.1139; leaf: 0.0195; anthers: 0.0293 | Tau: 0.8241 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036 |
|---|
| Target CDS | Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |