CoNCRAtlas


CoNCRAtlas ID CoMIRGH063
Mature miRNA sequence UUGUGAUAUUAGUGAGGAACA
Locus A09:6449237-6449489(+)
Alignment 
Displayed Location: A09:6449314-6449457 Strand: +
AAUCAUAUUCUUACCUUCUUUUCUUCACAAAUAUCACAAUAAAACAUGGAUGAAACUAUCGAUGCCCAAAGCUGCCUCUUGUAUCGAUGAUAGAGUUCUAUUAUUGUGAUAUUAGUGAGGAACAAAAGGUAUUGAUAUGAGGUC
..)).)))))))))))))..((((((((.(((((((((((((.....((((.....(((((((((...(((......)))))))))))).....))))..))))))))))))).)))))))).....(((.(((((.....)))
.......................................................................................................UUGUGAUAUUAGUGAGGAACA.................... ghi-miR1474a
....................UUCUUCACAAAUAUCACAAUA....................................................................................................... ghi-miR1474a*
miRNA family miR1474

Expression profile

Tissue specificity indexovule: 0.0435; fiber: 0.0306; shoot apical: 0.1213; ovule and fiber: 0.0181; cotyledon: 0.0174; cotton boll: 0.067; callus: 0.1064; leaf: 0.3939; anthers: 0.0753; hypocotyls: 0.0731; seedlings: 0.0533 | Tau: 0.8461

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH03667, CoLNCGH03666, CoLNCGH03665, CoLNCGH40236, CoLNCGH40237, CoLNCGH40235, CoLNCGH40245, CoLNCGH40244, CoLNCGH40243, CoLNCGH40242
Target CDS Gh_D05G294600.1, Gh_A13G006600.1, Gh_D06G206800.1, Gh_A10G215200.1, Gh_D10G238700.1, Gh_A02G016600.1, Gh_A02G016100.1, Gh_D02G023100.1, Gh_D02G018500.1, Gh_A02G016200.1
sORF
Reference
PMID Title
No references available