CoNCRAtlas


CoNCRAtlas ID CoMIRGH062
Mature miRNA sequence ACAAGUAGGCUGAGGUUUGACAA
Locus A09:48367071-48367220(-)
Alignment 
Displayed Location: A09:48367064-48367210 Strand: -
CAGUAGAGUUUUUAGACUCCACAAGUAGGCUGAGGUUUGACAAGUGUAUUAUAAGAUGUAGUAAGAAUAAAGAAAUUAAUUUAUAUAAAUAAAUGUGACACUUGUCAUACCCUCAACCUGCUUGUGGAGUCUAAAAAGCUCUAGUAU
...((((((((((((((((((((((((((.(((((..((((((((((..(((...((((((....(((......)))...))))))......)))..))))))))))...))))).)))))))))))))))).))))))))))))))
....................ACAAGUAGGCUGAGGUUUGACAA........................................................................................................ ghi-miRN11
.......................................................................................................GUCAUACCCUCAACCUGCUUGUGG.................... ghi-miRN11*
miRNA family miRN11

Expression profile

Tissue specificity indexovule: 0.0195; fiber: 0.1072; shoot apical: 0.38; ovule and fiber: 0.0854; cotyledon: 0.0085; cotton boll: 0.0124; callus: 0.073; leaf: 0.0292; anthers: 0.1174; hypocotyls: 0.1651; seedlings: 0.0023 | Tau: 0.8369

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH27426, CoLNCGH27425, CoLNCGH36860, CoLNCGH36862, CoLNCGH36863, CoLNCGH36865, CoLNCGH36867, CoLNCGH36868, CoLNCGH27424, CoLNCGH36859
Target CDS Gh_A05G418600.1, Gh_A10G043800.1, Gh_D10G056600.1, Gh_A10G056400.1, Gh_D10G113100.1, Gh_A11G162800.1, Gh_D11G164100.1, Gh_A08G186900.1, Gh_A12G143300.1, Gh_A07G143700.1
sORF
Reference
PMID Title
No references available