CoNCRAtlas


CoNCRAtlas ID CoMIRGH060
Mature miRNA sequence UGUGAAAAUCAGGCAAUGUUU
Locus A09:3148802-3149022(-)
Alignment 
Displayed Location: A09:3148794-3149028 Strand: -
UUUUCAUCUAAAGUCUUGCAUGUGAAAAUCAGGCAAUGUUUCAGCCAAGGAUGACUUGCCGACCUAUUUUUCUUUUAACAUUCCAAUGUAAAUCCAUGGCAUAUAUAUAUGGUUGUAUAUCAUAUUGAAGUCCAGAUCUAGAACAUUAUAAUAAAUGUUAUAAAGGGUUUAUCGGCAAGUCAUCUUUGGCUAUAUCAUUGUCUCAUUUUCUCAUGCUAGAUUUAUGAUGAAAAUA
((((((((..((((((.(((((.((((((.((((((((....((((((((((((((((((((.......(((((((((((((..(((((.......(((.((.(..(((((((.....)))))))..).)))))........)))))......))))))).))))))....))))))))))))))))))))....)))))))).)))))).))))).))))))..)))))))).)
....................UGUGAAAAUCAGGCAAUGUUU.................................................................................................................................................................................................. ghi-miRN10
..................................................................................................................................................................................................UCAUUGUCUCAUUUUCUCAUG.................... ghi-miRN10*
miRNA family miRN10

Expression profile

Tissue specificity indexovule: 0.3273; fiber: 0.0697; shoot apical: 0.0628; ovule and fiber: 0.2939; cotyledon: 0.0005; cotton boll: 0.0555; callus: 0.0029; leaf: 0.0995; anthers: 0.0805; hypocotyls: 0.0065; seedlings: 0.001 | Tau: 0.7944

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH34206, CoLNCGH34206, CoLNCGH00747, CoLNCGH00748, CoLNCGH00749, CoLNCGH00750, CoLNCGH49676, CoLNCGH45708, CoLNCGH27211, CoLNCGH52716
Target CDS Gh_D11G244400.1, Gh_A10G212300.1, Gh_D10G235600.1, Gh_Contig00133G003200.1, Gh_A09G108300.1, Gh_D09G164800.2, Gh_A10G151600.1, Gh_D09G164800.1, Gh_A10G220700.1, Gh_A12G219000.1
sORF
Reference
PMID Title
No references available