| CoNCRAtlas ID | CoMIRGH057 |
|---|---|
| Mature miRNA sequence | UUCCACAGCUUUCUUGAACUU |
| Locus | A08:124197972-124198092(-) |
| Alignment | Displayed Location: A08:124197961-124198112 Strand: - UAAAAGUUCUGGCCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGUGUACUUGUUUGUAUGUAUGUAUGUAUGAAGCUAACAAAGGUUUAGAUAGAGGAAACCAUGGGAGCUCAAGAAAGCUGUGGGAGAAGAUGGCAACGUCUCAGGAC ...(((((((((((((..(((((((((((((((((((.(((((...((...((((((((.((.(.(((..((.....))..))).).)).)))))).))...))...))))).)))))))))))))))))))..))))).......)))))) ....................UUCCACAGCUUUCUUGAACUU............................................................................................................... ghi-miR396c ...............................................................................................................GCUCAAGAAAGCUGUGGGAGA.................... ghi-miR396c* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0037; fiber: 0.0585; shoot apical: 0.0112; cotyledon: 0.5381; cotton boll: 0.0075; callus: 0.001; leaf: 0.0059; anthers: 0.3714; hypocotyls: 0.0027 | Tau: 0.9142 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 28327647 | MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development |