CoNCRAtlas


CoNCRAtlas ID CoMIRGH056
Mature miRNA sequence AAGCUCAGGAGGGAUAGCGCC
Locus A08:119802894-119803037(+)
Alignment 
Displayed Location: A08:119802920-119803057 Strand: +
CGAGUAUGGGAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCUAAGCUAUUUCUUUCUUUCUUUCUUUCUUUCUUUUUUGCAGAAAUAUCAUCUGCGGCGCUAUCUAUCCUGAGUUUCAUGGGUUCUUCCUGCUAUAUG
(((.(.(((((((((((((.((((((((((.((((((((((.(((......)))........................(((((.......))))))))))))))).)))))))))).)))))))))))(((((((((.
....................AAGCUCAGGAGGGAUAGCGCC................................................................................................. ghi-miR390b
.................................................................................................CGCUAUCUAUCCUGAGUUUCA.................... ghi-miR390b*
miRNA family miR390

Expression profile

Tissue specificity indexovule: 0.374; fiber: 0.3542; shoot apical: 0.0282; ovule and fiber: 0.0411; cotyledon: 0.0029; cotton boll: 0.0925; callus: 0.0007; leaf: 0.0387; anthers: 0.0618; hypocotyls: 0.0018; seedlings: 0.004 | Tau: 0.8326

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036
Target CDS Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)