| CoNCRAtlas ID | CoMIRGH055 |
|---|---|
| Mature miRNA sequence | UUCGGACCAGGCUUCAUUCCC |
| Locus | A08:117397139-117397234(-) |
| Alignment | Displayed Location: A08:117397127-117397246 Strand: -
UUACAGGAAAUCGUUGCGUGGAAUGUUGUCUGGUUCAAAGUCAUUCAUGUGAAUGUUUUAAACGGCCUUUGUGAAUGAUUUCGGACCAGGCUUCAUUCCCCCCAACUUUUGGUAUAAUAC
).))))))....((((.(.((((((..(((((((((.((((((((((((....((((...)))).....)))))))))))).)))))))))..)))))).).))))....((((...)))
...............................................................................UUCGGACCAGGCUUCAUUCCC.................... ghi-miR166c
....................GAAUGUUGUCUGGUUCAAAGg............................................................................... ghi-miR166c*
|
| miRNA family | miR166 |
Expression profile
| Tissue specificity index | ovule: 0.002; fiber: 0.0085; shoot apical: 0.0416; cotyledon: 0.3981; cotton boll: 0.0008; leaf: 0.4238; anthers: 0.0134; seedlings: 0.1118 | Tau: 0.864 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH44143, CoLNCGH30892, CoLNCGH07833, CoLNCGH07834, CoLNCGH49394, CoLNCGH49395 |
|---|
| Target CDS | Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1, Gh_D05G102000.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25371507 | Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton |