CoNCRAtlas


CoNCRAtlas ID CoMIRGH053
Mature miRNA sequence UUUGCAUGAACUAGGAGACGU
Locus A08:100866664-100866852(-)
Alignment 
Displayed Location: A08:100866688-100866812 Strand: -
AGGAAAUGACGGUAGGCUACGGCUGCUAGUUCAUGGAUGCCCUUGGAUGCGUAAAAAUGGGCAUGAGGGGUACGCUGCUGAGGGUUUGCAUGAACUAGGAGACGUUGUUACCUUCAUCUUUACGG
((...((((.(((((.(.(((.((.((((((((((.(.((((((((..(((((....(.......)....)))))..)))))))).).)))))))))).)).))).)))))).))))))))..))
....................................................................................UUUGCAUGAACUAGGAGACGU.................... ghi-miR1383a
....................GGCUGCUAGUUCAUGGAUGCC.................................................................................... ghi-miR1383a*
miRNA family miR1383

Expression profile

Tissue specificity indexovule: 0.002; fiber: 0.0024; shoot apical: 0.0146; ovule and fiber: 0.0003; cotyledon: 0.0003; cotton boll: 0.0037; leaf: 0.6589; anthers: 0.0005; hypocotyls: 0.3174 | Tau: 0.9482

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH15360, CoLNCGH46600, CoLNCGH15359, CoLNCGH15358, CoLNCGH08501, CoLNCGH01099, CoLNCGH05797, CoLNCGH15357, CoLNCGH23734, CoLNCGH07403
Target CDS Gh_A11G372500.1, Gh_A11G372500.2, Gh_D08G101000.2, Gh_A08G097400.1, Gh_D08G101000.1, Gh_D11G380700.1, Gh_A05G210200.1, Gh_D05G226900.1, Gh_A11G145400.1, Gh_D11G146600.1
sORF
Reference
PMID Title
No references available