CoNCRAtlas


CoNCRAtlas ID CoMIRGH051
Mature miRNA sequence UGCCUGGCUCCCUGAAUGCCA
Locus A07:90145436-90145547(-)
Alignment 
Displayed Location: A07:90145419-90145553 Strand: -
AUGAAACAAUGGAAAUGAUCUGCCUGGCUCCCUGAAUGCCAACUAUGAAUGGUGUCAAAUAAGCGGUGUUGUGUUGUUGGCCCUUUCCUAGUUGGCAUCUGAGGACUCAGGCAGGUCUAUCCUUUUUAUCAUCUU
((((......(((...(((((((((((.((((.((.(((((((((.(((.((.(((((....(((....)))....))))))).))).))))))))))).).))).)))))))))))..)))......)))))))
....................UGCCUGGCUCCCUGAAUGCCA.............................................................................................. ghi-miR160b
..............................................................................................GCAUCUGAGGACUCAGGCAGG.................... ghi-miR160b*
miRNA family miR160

Expression profile

Tissue specificity indexovule: 0.7632; fiber: 0.025; shoot apical: 0.0032; ovule and fiber: 0.0027; cotyledon: 0.0272; cotton boll: 0.0144; callus: 0.0061; leaf: 0.1046; anthers: 0.001; hypocotyls: 0.0045; seedlings: 0.048 | Tau: 0.969
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D026917736569177603-Mutator_TIR_transposon
Target lncRNA CoLNCGH03813, CoLNCGH27436, CoLNCGH25995, CoLNCGH25994, CoLNCGH03815, CoLNCGH03814, CoLNCGH07477, CoLNCGH21237, CoLNCGH21238, CoLNCGH21239
Target CDS Gh_D05G102300.1, Gh_D06G044400.1, Gh_A06G045000.1, Gh_A05G215500.1, Gh_D05G232400.1, Gh_A03G044600.1, Gh_A03G044600.2, Gh_D03G152600.1, Gh_D03G152600.2, Gh_A05G090400.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development