CoNCRAtlas


CoNCRAtlas ID CoMIRGH050
Mature miRNA sequence UUGACAGAAGAUAGAGAGCAC
Locus A07:8030618-8030752(+)
Alignment 
Displayed Location: A07:8030648-8030772 Strand: +
GGAGGCAGUGGUGAAUGUUGUUGACAGAAGAUAGAGAGCACAGAUGAUGGUUUGCAAGUACUUAAUGCAUUCCCCUCCUUUGUGCUCUCUAUGCUUCUGUCAUCAUCACCUUCAGCCCCUCUUAC
((.(((...(((((....((.(((((((((((((((((((((((.((.((..((((.........))))..))..)).)))))))))))))).))))))))).)))))))....))))))))).)
....................UUGACAGAAGAUAGAGAGCAC.................................................................................... ghi-miR156e
...................................................................................GCUCUCUAUGCUUCUGUCAUCA.................... ghi-miR156e*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0004; shoot apical: 0.2827; cotyledon: 0.0014; leaf: 0.2234; anthers: 0.0026; hypocotyls: 0.4894 | Tau: 0.8957
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A0780303398033271+CoLNCGH29996
A0780304788033271+CoLNCGH29997
Target lncRNA CoLNCGH44573, CoLNCGH44572, CoLNCGH44573, CoLNCGH44572, CoLNCGH38244, CoLNCGH14404, CoLNCGH14403, CoLNCGH28903, CoLNCGH15626, CoLNCGH15625
Target CDS Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2, Gh_A01G173100.3, Gh_D04G208500.1, Gh_A04G164100.1, Gh_A11G360800.1
sORF
Reference
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PMID Title