CoNCRAtlas


CoNCRAtlas ID CoMIRGH049
Mature miRNA sequence UUCCACAGCUUUCUUGAACUU
Locus A07:4927238-4927372(+)
Alignment 
Displayed Location: A07:4927230-4927377 Strand: +
GAGAAGUCCUGGUCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGAGUACUAACUCCGUCCUAAGGGAGAAAGAAAAAAAAAACAUUUGCUAGCACACCAUGGAAGCUCAAGAAAGCUGUGGGAAAACAUGAUGGCAAUUCAGGAC
(((((((((((((((((.(((((((((((((((((((.(((((.....((.(((.((((........)))).....................))).)).....))))).))))))))))))))))))).)))))).......))))))
....................UUCCACAGCUUUCUUGAACUU........................................................................................................... ghi-miR396b
...........................................................................................................GCUCAAGAAAGCUGUGGGAAA.................... ghi-miR396b*
miRNA family miR396

Expression profile

Tissue specificity indexovule: 0.0002; fiber: 0.7576; shoot apical: 0.0413; ovule and fiber: 0.0046; cotyledon: 0.0365; cotton boll: 0.0731; leaf: 0.0018; anthers: 0.0569; hypocotyls: 0.028 | Tau: 0.968
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024
Target CDS Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1
sORF
Reference
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PMID Title