| CoNCRAtlas ID | CoMIRGH049 |
|---|---|
| Mature miRNA sequence | UUCCACAGCUUUCUUGAACUU |
| Locus | A07:4927238-4927372(+) |
| Alignment | Displayed Location: A07:4927230-4927377 Strand: + GAGAAGUCCUGGUCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGAGUACUAACUCCGUCCUAAGGGAGAAAGAAAAAAAAAACAUUUGCUAGCACACCAUGGAAGCUCAAGAAAGCUGUGGGAAAACAUGAUGGCAAUUCAGGAC (((((((((((((((((.(((((((((((((((((((.(((((.....((.(((.((((........)))).....................))).)).....))))).))))))))))))))))))).)))))).......)))))) ....................UUCCACAGCUUUCUUGAACUU........................................................................................................... ghi-miR396b ...........................................................................................................GCUCAAGAAAGCUGUGGGAAA.................... ghi-miR396b* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0002; fiber: 0.7576; shoot apical: 0.0413; ovule and fiber: 0.0046; cotyledon: 0.0365; cotton boll: 0.0731; leaf: 0.0018; anthers: 0.0569; hypocotyls: 0.028 | Tau: 0.968 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |