CoNCRAtlas


CoNCRAtlas ID CoMIRGH048
Mature miRNA sequence UCUGACAGUGCACUGAAAACG
Locus A07:48840149-48840367(-)
Alignment 
Displayed Location: A07:48840219-48840387 Strand: -
AAUGCUCAACGUAGGAUGCGUUUUCAAUGCACUGUCAAAAAAUGAACUAAAAGCCCGUCCAGCUGGACGUAUUUUCAUGCCAUGUCAGCUAAAAACGUGUCCAACUAGACGUGCUUUCAGUGCAUUUUUCUGACAGUGCACUGAAAACGCAUCCAUCUGGGCGUAUUUU
(((((((.(((..(((((((((((((.(((((((((((((((((.(((.(((((.((((.((.((((((..((((...((.......))..))))..)))))).)).)))).))))).))).))))))).)))))))))).)))))))))))))....((((...((((
................................................................................................................................UCUGACAGUGCACUGAAAACG.................... ghi-miR8640
....................UUUUCAAUGCACUGUCAAAA................................................................................................................................. ghi-miR8640*
miRNA family miR8640

Expression profile

Tissue specificity indexovule: 0.0907; fiber: 0.0509; shoot apical: 0.0395; ovule and fiber: 0.0358; cotton boll: 0.0133; callus: 0.0352; leaf: 0.1612; anthers: 0.5735 | Tau: 0.9256

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH10816, CoLNCGH10817, CoLNCGH39331, CoLNCGH39332, CoLNCGH39086, CoLNCGH30122, CoLNCGH30121, CoLNCGH30120, CoLNCGH39084, CoLNCGH34482
Target CDS Gh_D03G149600.1, Gh_A03G047100.1, Gh_A05G097700.1, Gh_D05G110000.1, Gh_A09G228700.1, Gh_D09G219900.1, Gh_D07G143000.1, Gh_D07G143000.2, Gh_A09G256000.1, Gh_D02G152600.1
sORF
Reference
PMID Title
No references available