| CoNCRAtlas ID | CoMIRGH047 |
|---|---|
| Mature miRNA sequence | UUGAGCCGCGCCAAUAUCACU |
| Locus | A07:4806324-4806459(+) |
| Alignment | Displayed Location: A07:4806319-4806437 Strand: + UUAGGAAGCAAAAAUAAAAGCGAUGUUGGUGCGGUUCAAUCCGAAAACGAAUUUACAAUCGUAAAAUACGAUAUCAGAUUGAGCCGCGCCAAUAUCACUUUCCGCAAGUCUCCAAAUUU ((((((((((((....((((.((((((((((((((((((((.((...(((.(((((....))))).).))...)).)))))))))))))))))))).))))...............))) ..............................................................................UUGAGCCGCGCCAAUAUCACU.................... ghi-miR171c ....................CGAUGUUGGUGCGGUUCAAUC.............................................................................. ghi-miR171c* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0125; fiber: 0.0063; shoot apical: 0.0648; ovule and fiber: 0.0087; cotyledon: 0.0036; cotton boll: 0.0022; callus: 0.5536; leaf: 0.1159; anthers: 0.0188; hypocotyls: 0.1752; seedlings: 0.0384 | Tau: 0.9194 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH12977, CoLNCGH36567, CoLNCGH12976, CoLNCGH36566, CoLNCGH36565 |
|---|
| Target CDS | Gh_A12G245400.1, Gh_D12G239800.1, Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |