CoNCRAtlas


CoNCRAtlas ID CoMIRGH045
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus A07:3334082-3334247(+)
Alignment 
Displayed Location: A07:3334073-3334197 Strand: +
UUAGAGAGGAAGGAGAGGUCUGACAGAAGAGAGUGAGCACACGCAGGCAGAUUGUAUGAAAGGCCAUACCUUUGCCCGCCGUGUGCUCACUUCUCUUCUGUCAGCUUAACAAUUCACUCUUUUCA
...((((((((....(((.(((((((((((((((((((((((((.((((((..(((((......))))).)))))).).))))))))))).)))))))))))))))).....))).)))))))))
....................UGACAGAAGAGAGUGAGCAC..................................................................................... ghi-miR156c
....................................................................................GCUCACUUCUCUUCUGUCAGC.................... ghi-miR156c*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0078; fiber: 0.0591; shoot apical: 0.0446; ovule and fiber: 0.0045; cotyledon: 0.0095; cotton boll: 0.0043; callus: 0.0055; leaf: 0.1915; anthers: 0.0966; hypocotyls: 0.5494; seedlings: 0.027 | Tau: 0.918

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH29713, CoLNCGH34498, CoLNCGH19317, CoLNCGH44731, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity