| CoNCRAtlas ID | CoMIRGH044 |
|---|---|
| Mature miRNA sequence | GGAAUGUUGUCUGGCUCGAGG |
| Locus | A07:29538583-29538804(-) |
| Alignment | Displayed Location: A07:29538643-29538809 Strand: - GCGGAGUAACCAAUUUGAGGGGAAUGUUGUCUGGCUCGAGGACACUUGUUUUUAAUCCAUUUCUUGCAUUACAAUUCAUUUAUGGAUCUGAUUAUUGCUGUAAUGGAUUGAGGCUGUACAAGGUCGUCGGACCAGGCUUCAUUCCCCCUAAUGCUUGCUCCUAUAUG (((((((((.((..(((.((((((((..((((((.((((.(((.(((((((((((((((((....(((.(((((((((....))))).))..)).)))...))))))))))))....)))))))).)))).))))))..)))))))).))))).)))))))...... ....................GGAAUGUUGUCUGGCUCGAGG.............................................................................................................................. ghi-miR166b ..............................................................................................................................UCGGACCAGGCUUCAUUCCCC.................... ghi-miR166b* |
| miRNA family | miR166 |
Expression profile
| Tissue specificity index | ovule: 0.143; fiber: 0.0499; shoot apical: 0.0101; ovule and fiber: 0.0466; cotyledon: 0.0377; cotton boll: 0.0434; callus: 0.0081; leaf: 0.1824; anthers: 0.005; hypocotyls: 0.3519; seedlings: 0.1219 | Tau: 0.8158 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH30892, CoLNCGH30892, CoLNCGH49394, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH30891, CoLNCGH49395, CoLNCGH04460, CoLNCGH00373 |
|---|
| Target CDS | Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A12G088500.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |