CoNCRAtlas


CoNCRAtlas ID CoMIRGH044
Mature miRNA sequence GGAAUGUUGUCUGGCUCGAGG
Locus A07:29538583-29538804(-)
Alignment 
Displayed Location: A07:29538643-29538809 Strand: -
GCGGAGUAACCAAUUUGAGGGGAAUGUUGUCUGGCUCGAGGACACUUGUUUUUAAUCCAUUUCUUGCAUUACAAUUCAUUUAUGGAUCUGAUUAUUGCUGUAAUGGAUUGAGGCUGUACAAGGUCGUCGGACCAGGCUUCAUUCCCCCUAAUGCUUGCUCCUAUAUG
(((((((((.((..(((.((((((((..((((((.((((.(((.(((((((((((((((((....(((.(((((((((....))))).))..)).)))...))))))))))))....)))))))).)))).))))))..)))))))).))))).)))))))......
....................GGAAUGUUGUCUGGCUCGAGG.............................................................................................................................. ghi-miR166b
..............................................................................................................................UCGGACCAGGCUUCAUUCCCC.................... ghi-miR166b*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.143; fiber: 0.0499; shoot apical: 0.0101; ovule and fiber: 0.0466; cotyledon: 0.0377; cotton boll: 0.0434; callus: 0.0081; leaf: 0.1824; anthers: 0.005; hypocotyls: 0.3519; seedlings: 0.1219 | Tau: 0.8158
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A072953561729539549-CoLNCGH30867
A072953689429539549-CoLNCGH30868
A072953689429539549-CoLNCGH30869
A072953689529539549-CoLNCGH30871
A072953689629539549-CoLNCGH30872
A072953689829539549-CoLNCGH30873
A072953690029539549-CoLNCGH30874
A072953690129539549-CoLNCGH30875
A072953690929539549-CoLNCGH30876
A072953691929539549-CoLNCGH30877
A072953625229539549-CoLNCGH30878
A072953692929539549-CoLNCGH30879
A072953693629539549-CoLNCGH30880
A072953694129539549-CoLNCGH30882
A072953704429539549-CoLNCGH30883
A072953678229539549-CoLNCGH30884
A072953681029539549-CoLNCGH30885
A072953681029539549-CoLNCGH30886
A072953684729539549-CoLNCGH30887
A072953685029539549-CoLNCGH30888
A072953687329539549-CoLNCGH30889
A072953688429539549-CoLNCGH30890
A072953561729539549+CoLNCGH30891
A072953694929539549+CoLNCGH30892
Target lncRNA CoLNCGH30892, CoLNCGH30892, CoLNCGH49394, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH30891, CoLNCGH49395, CoLNCGH04460, CoLNCGH00373
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A07G025800.1, Gh_A12G088500.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)