CoNCRAtlas



CoNCRAtlas ID CoMIRGH043
Mature miRNA sequence UUAAAGUAGAAAUAUAAGAAA
Locus A07:18368-18495(-)
Alignment
Displayed Location: A07:18352-18511 Strand: -
AUCAUCUUCAACCAGUUCCGUCUUAUAUUUCUACUUUAACAAUAUUCUUAUUUUCUUCUUCGCCCGUUGGGUUUCUGUAUAAUUACACUAUUGUUGCCAAUCAGAACUUAUAAAUAUUGUUAAAGUAGAAAUAUAAGAAAAUAUUGUAUAAUUACACUUU
))))).......((((....((((((((((((((((((((((((((..((..((((.....((((...))))...((((....))))..((((....)))).))))..))..))))))))))))))))))))))))))....))))..............
.......................................................................................................................UUAAAGUAGAAAUAUAAGAAA.................... ghi-miR7502
....................UCUUAUAUUUCUACUUUAACA....................................................................................................................... ghi-miR7502*
miRNA family miR7502

Expression profile

Tissue specificity indexovule: 0.1775; fiber: 0.012; shoot apical: 0.1897; ovule and fiber: 0.0542; cotyledon: 0.0167; cotton boll: 0.0718; callus: 0.056; leaf: 0.2965; anthers: 0.0979; hypocotyls: 0.0258; seedlings: 0.0019 | Tau: 0.7627
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH48645, CoLNCGH48644, CoLNCGH48643, CoLNCGH48364, CoLNCGH48638, CoLNCGH48639, CoLNCGH48640, CoLNCGH48641, CoLNCGH48642, CoLNCGH48637
Target CDS Gh_A12G241400.3, Gh_A12G241400.4, Gh_A12G241400.2, Gh_A12G241400.1, Gh_A12G241400.6, Gh_A12G241400.7, Gh_A12G241400.8, Gh_A12G241400.9, Gh_A12G241400.5, Gh_D07G196700.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)