| CoNCRAtlas ID | CoMIRGH042 |
|---|---|
| Mature miRNA sequence | UGACAACGAGAGAGAGCACGU |
| Locus | A07:15202200-15202331(+) |
| Alignment | Displayed Location: A07:15202221-15202340 Strand: + AGAUAUGAUACAUUAUCAAUUGACAACGAGAGAGAGCACGUUUGUAGCCAUUCAUACAUGGUCAUGGAUGCAUACAAGCGUGCUCUCUAUCGUUGUCAUGUGAUUUGUACAUGUCUCUCC (((((((.((((..((((..(((((((((.((((((((((((((((..(((((((........)))))))..)))))))))))))))).)))))))))..)))).))))))))))).... ....................UGACAACGAGAGAGAGCACGU............................................................................... ghi-miR535a ...............................................................................GUGCUCUCUAUCGUUGUCAUG.................... ghi-miR535a* |
| miRNA family | miR535 |
Expression profile
| Tissue specificity index | ovule: 0.0346; fiber: 0.0515; shoot apical: 0.3186; ovule and fiber: 0.0642; cotyledon: 0.0465; cotton boll: 0.0145; callus: 0.0721; leaf: 0.2051; anthers: 0.0306; hypocotyls: 0.1261; seedlings: 0.0362 | Tau: 0.7862 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH30288, CoLNCGH30288, CoLNCGH39853, CoLNCGH39855, CoLNCGH39859, CoLNCGH39864, CoLNCGH30287, CoLNCGH15815, CoLNCGH15816, CoLNCGH15817 |
|---|
| Target CDS | Gh_A07G099000.1, Gh_D11G154200.1, Gh_A07G099000.1, Gh_D11G154200.1, Gh_D07G227700.1, Gh_A03G135600.1, Gh_D02G164900.1, Gh_A11G013700.1, Gh_D08G016400.1, Gh_A07G229700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |