| CoNCRAtlas ID | CoMIRGH040 |
|---|---|
| Mature miRNA sequence | UGACAGAAGAGAGUGAGCAC |
| Locus | A06:28433458-28433553(-) |
| Alignment | Displayed Location: A06:28433444-28433573 Strand: - GGUUUUUAGGGUAACGGAGGUGACAGAAGAGAGUGAGCACCCAGGGUGUUUUCUUGCAUGCUUGGGCUUUCAUGCUUGAAGCUUUGAGUGCUCACUCUCUAUCUGUCAUCCACUUCUCUCUCUCUUUCUU ((((((..(((((..(..((((((((((((((((((((((.((((((...(((..(((((..........)))))..))))))))).))))))))))))).)))))))))..)........(((((.(.. ....................UGACAGAAGAGAGUGAGCAC.......................................................................................... ghi-miR156b .........................................................................................GCUCACUCUCUAUCUGUCAUC.................... ghi-miR156b* |
| miRNA family | miR156 |
Expression profile
| Tissue specificity index | ovule: 0.0015; fiber: 0.0101; shoot apical: 0.0037; cotyledon: 0.0191; cotton boll: 0.0011; callus: 0.0778; leaf: 0.349; anthers: 0.0021; hypocotyls: 0.5128; seedlings: 0.0228 | Tau: 0.905 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH29713, CoLNCGH02111, CoLNCGH02111, CoLNCGH34482, CoLNCGH34487, CoLNCGH34488, CoLNCGH34490, CoLNCGH34491, CoLNCGH34486, CoLNCGH34485 |
|---|
| Target CDS | Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |