CoNCRAtlas


CoNCRAtlas ID CoMIRGH035
Mature miRNA sequence AGAUAUUGGUGCGGUUCAAUU
Locus A06:114400811-114400897(-)
Alignment 
Displayed Location: A06:114400793-114400914 Strand: -
AAAAAGUAAGAAUGUUAACGAGAUAUUGGUGCGGUUCAAUUUAAGAGCAUCACUCUAAAGGUUAAGAGUUAUGUUAUUUGAUUGAGCCGUGCCAAUAUCACGUAAUAAUUAUACACCUUUGC
(....((((((((((((.((.((((((((((((((((((((....(((((.(((((........))))).)))))....)))))))))))))))))))).))))))).((((((...(((((
....................AGAUAUUGGUGCGGUUCAAUU................................................................................. ghi-miR171b
.................................................................................UUGAGCCGUGCCAAUAUCACG.................... ghi-miR171b*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.2362; fiber: 0.1722; shoot apical: 0.1002; ovule and fiber: 0.0786; cotyledon: 0.0108; cotton boll: 0.0168; callus: 0.0094; leaf: 0.0652; anthers: 0.2934; hypocotyls: 0.007; seedlings: 0.0102 | Tau: 0.7591

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH11226, CoLNCGH17852, CoLNCGH26838, CoLNCGH51937, CoLNCGH02014, CoLNCGH23991, CoLNCGH36571, CoLNCGH36570, CoLNCGH29016, CoLNCGH36569
Target CDS Gh_A12G245400.1, Gh_D12G239800.1, Gh_D12G109400.1, Gh_A12G109700.1, Gh_D08G192900.1, Gh_A08G196200.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)