CoNCRAtlas


CoNCRAtlas ID CoMIRGH034
Mature miRNA sequence AUCAUGCUAUCCCUUCGGAUU
Locus A05:94107998-94108074(-)
Alignment 
Displayed Location: A05:94107985-94108094 Strand: -
GCUGGCAGCUAGAGGAGGCAUCCAAAGGGAUCGCAUUGAUCCUUUAUUUUUCUUCAUUCACAAUUUUGGAUCAUGCUAUCCCUUCGGAUUUUUCCUUUGGUAGCUUCAUA
(((....(((((((((((.((((.(((((((.((((.(((((.........................))))))))).))))))).)))).)))))))))))))))))...
.....................................................................AUCAUGCUAUCCCUUCGGAUU.................... ghi-miRN9
....................UCCAAAGGGAUCGCAUUGAUCC.................................................................... ghi-miRN9*
miRNA family miRN9

Expression profile

Tissue specificity indexovule: 0.1689; fiber: 0.0994; shoot apical: 0.0059; ovule and fiber: 0.0166; cotyledon: 0.2484; cotton boll: 0.2512; leaf: 0.0648; anthers: 0.1407; hypocotyls: 0.0039 | Tau: 0.702
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A059410532794108189-CoLNCGH26933
Target lncRNA CoLNCGH39329, CoLNCGH09277, CoLNCGH39666, CoLNCGH39667, CoLNCGH39668, CoLNCGH45380, CoLNCGH45381, CoLNCGH00821, CoLNCGH00820, CoLNCGH40640
Target CDS Gh_D11G068200.2, Gh_A11G068600.1, Gh_D07G255600.1, Gh_D11G068200.1, Gh_A07G257700.1, Gh_A08G050800.1, Gh_A08G080300.1, Gh_A08G134700.1, Gh_A11G125100.1, Gh_D08G075500.1
sORF
Reference
PMID Title
0NA