CoNCRAtlas


CoNCRAtlas ID CoMIRGH033
Mature miRNA sequence UGAUUGAGCCGUGCCAAUAUC
Locus A05:82651453-82651553(-)
Alignment 
Displayed Location: A05:82651447-82651563 Strand: -
UAAAAUAGUUGAAAAUUUGAUGUUGGCACGGUUCAAUCAGAUCAAAUCUCUCAGUGACUGGCUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUCAGAGUUAGUCAAUUUAUCAC
(((....(((((...(((((((((((((((((((((((((((.(((...((((((.....))))))...))).))))))))))))))))))))))))))).....))))))))))).
............................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR171a
....................UGUUGGCACGGUUCAAUCAGA............................................................................ ghi-miR171a*
miRNA family miR171

Expression profile

Tissue specificity indexfiber: 0.422; shoot apical: 0.0105; cotyledon: 0.0107; cotton boll: 0.0067; callus: 0.0014; leaf: 0.1835; anthers: 0.0577; hypocotyls: 0.3076 | Tau: 0.863

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH17852, CoLNCGH29016, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH06349, CoLNCGH12977, CoLNCGH18853
Target CDS Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)