CoNCRAtlas


CoNCRAtlas ID CoMIRGH032
Mature miRNA sequence UCUUACCAACCCCUCCCAUACC
Locus A05:74772837-74773133(+)
Alignment 
Displayed Location: A05:74772987-74773100 Strand: +
GUGGUGUUGGGGGUUGGAGGUGUGGGAGAGUUGGGCAAGAAUUAUGACCUUUGUUCAAUCCAAAGGGGCAAUUCUUACCAACCCCUCCCAUACCCUUGAUUUCCAACCGUUGCU
...(.((((((((((((.((((((((((.(((((..(((((((....((((((.......))))))...))))))).)))))..)))))))))).)))))))))))))....))
........................................................................UCUUACCAACCCCUCCCAUACC.................... ghi-miR482b
....................UGUGGGAGAGUUGGGCAAGAAU........................................................................ ghi-miR482b*
miRNA family miR482

Expression profile

Tissue specificity indexovule: 0.0083; fiber: 0.0845; shoot apical: 0.029; ovule and fiber: 0.0049; cotyledon: 0.1602; cotton boll: 0.0272; callus: 0.0215; leaf: 0.1003; anthers: 0.2275; hypocotyls: 0.0788; seedlings: 0.2577 | Tau: 0.712

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH07639, CoLNCGH07638, CoLNCGH27620, CoLNCGH04904, CoLNCGH27619, CoLNCGH46948, CoLNCGH23007, CoLNCGH23006, CoLNCGH02176, CoLNCGH02175
Target CDS Gh_A10G225000.1, Gh_A12G166000.1, Gh_A01G096600.1, Gh_D01G091900.1, Gh_D12G164000.1, Gh_D10G216300.1, Gh_D10G076900.1, Gh_A05G284600.1, Gh_D05G296800.1, Gh_A12G104100.1
sORF
Reference
PMID Title
28327647MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development